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Legend

  = MISM; Mismatch (discrepancy) between reads and consensus
  = ALUS; Repetitive ALU sequence
  = PRMB; Possible Repeat Marker Base set by MIRA
  = EDxD; Delete operation set by EdIt
  = EDxI; Insert operation set by EdIt
  = EDxC; Change operation set by EdIt

Contig List

Contig 1 (790), Contig 2 (370), Contig 3 (783)

CONTIG 1

Statistics

Contig id: 1
Contig length: 790
Avg. contig coverage: 2.7038
Consensus contains: A: 234 C: 149 G: 130 T: 274 N: 3 *: 0

Num reads: 4
Avg. read length: 534
Reads contain 2133 bases, 3 Ns and 0 gaps.

Contig

0
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ GAACCTCCTAATGCTTCGTCTTTCTGTTCTGCACATGGTCTGGTCACCTATGAATAAGTA
Consensus: GAACCTCCTAATGCTTCGTCTTTCTGTTCTGCACATGGTCTGGTCACCTATGAATAAGTA

60
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ TGAAAATGCTTCGGACTTGAAGCCCATCGCCAATCCCAGTGCCAGACGTGTGTTTGCTCT
U13a05h03.t1-                                                         CTCT
Consensus: TGAAAATGCTTCGGACTTGAAGCCCATCGCCAATCCCAGTGCCAGACGTGTGTTTGCTCT

120
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ TCCCGTTCAACTTGCAAAAGATTACGTGTCTCAACAACTTTTCTCTTTTCCATCATTAAT
U13a05h03.t1- TCCCGTTCAACTTGCAAAAGATTACGTGTCTCAACAACTTTTCTCTTTTCCATCATTAAT
U13a03f07.t1-                             TcTCAACAACTTTTcTCTTTTCCATCATTAAT
Consensus: TCCCGTTCAACTTGCAAAAGATTACGTGTCTCAACAACTTTTCTCTTTTCCATCATTAAT

180
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ TATGTTTTTCCTTCATTCATCATTTTAAGGCATATGCTTAATAAGATAGACTTTTTTATG
U13a05h03.t1- TATGTTTTTCCTTCATTcATCATttTAAGGCATATGCTTAATAAGATAGACTTTTTTATG
U13a03f07.t1- tATGTTTTTCcTTCATTCATCATTTTAAGGCAtAtGCTTAATAAGATAGACTTTTTTATG
Consensus: TATGTTTTTCCTTCATTCATCATTTTAAGGCATATGCTTAATAAGATAGACTTTTTTATG

240
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ CTGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT
U13a05h03.t1- CTGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT
U13a03f07.t1- CtGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT
Consensus: CTGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT

300
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC
U13a05h03.t1- GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC
U13a03f07.t1- GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC
Consensus: GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC

360
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC
U13a05h03.t1- CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC
U13a03f07.t1- CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC
Consensus: CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC

420
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC
U13a05h03.t1- AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC
U13a03f07.t1- AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC
Consensus: AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC

480
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA
U13a05h03.t1- ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA
U13a03f07.t1- ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA
U13a08c07.t1+     TATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA
Consensus: ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA

540
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA
U13a05h03.t1- ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA
U13a03f07.t1- ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA
U13a08c07.t1+ ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA
Consensus: ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA

600
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ ATTCTGATCCTATCTGAgCAATATAATAAAGTTTTAAAATAAACtTTCTTAGAAAATTAT
U13a05h03.t1- ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT
U13a03f07.t1- ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT
U13a08c07.t1+ ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT
Consensus: ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT

660
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a01g08.t1+ TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCAATTGGC                 
U13a05h03.t1- TTTTTTAATGTAAGC                                             
U13a03f07.t1- TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCAATTGGCTGCTTTCCATGATGTGA
U13a08c07.t1+ TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCaATTGGCTGCTTTCCATGAT    
Consensus: TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCAATTGGCTGCTTTCCATGATGTGA

720
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f07.t1- GGTCAATGAGTTTAGTTAAGAACTGTGATGGATNTGAGATCTTCCCCATANTTAGAAGNT
Consensus: GGTCAATGAGTTTAGTTAAGAACTGTGATGGATNTGAGATCTTCCCCATANTTAGAAGNT

780
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f07.t1- AATGGGGGTC                                                  
Consensus: AATGGGGGTC                                                  

CONTIG 2

Statistics

Contig id: 2
Contig length: 370
Avg. contig coverage: 1
Consensus contains: A: 103 C: 94 G: 86 T: 81 N: 6 *: 0

Num reads: 1
Avg. read length: 370
Reads contain 364 bases, 6 Ns and 0 gaps.

Contig

0
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ TCCNCCAACCTTCTCTAACTCAAAACNAATGGAAGATGCGTTTGATGTTCAGCGCGATCA
Consensus: TCCNCCAACCTTCTCTAACTCAAAACNAATGGAAGATGCGTTTGATGTTCAGCGCGATCA

60
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ TCTGGCGCTGATGAAAGATTTGAAACGTCTGCTGCGTGCAGGTGGGACNATCATGTTCTC
Consensus: TCTGGCGCTGATGAAAGATTTGAAACGTCTGCTGCGTGCAGGTGGGACNATCATGTTCTC

120
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ GAACAACAAACGTGGCTTCCGTATGGATCTCGACGGCCTGGCAAAACTGGGACTGAAAGC
Consensus: GAACAACAAACGTGGCTTCCGTATGGATCTCGACGGCCTGGCAAAACTGGGACTGAAAGC

180
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ ACAAGAAATTACNCNAAAAACGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAA
Consensus: ACAAGAAATTACNCNAAAAACGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAA

240
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ CTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGTATGCATGGC
Consensus: CTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGTATGCATGGC

300
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ GCATGGCTGTCGTTCAGCGACNCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAT
Consensus: GCATGGCTGTCGTTCAGCGACNCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAT

360
 |    .    |    .    |    .    |    .    |    .    |    .    
U13a03f09.t1+ AACGAACGTG                                                  
Consensus: AACGAACGTG                                                  

CONTIG 3

Statistics

Contig id: 3
Contig length: 783
Avg. contig coverage: 1
Consensus contains: A: 163 C: 161 G: 151 T: 306 N: 2 *: 0

Num reads: 1
Avg. read length: 783
Reads contain 781 bases, 2 Ns and 0 gaps.

Contig

0
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TGTTGCTTGTGGATGTCCAGTTTTCCCAGTACCATCTACAAAAAGACTATCCTTTCCCTA
Consensus: TGTTGCTTGTGGATGTCCAGTTTTCCCAGTACCATCTACAAAAAGACTATCCTTTCCCTA

60
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TTGTGTATTCTTGGCACACTTGTTGAAGATTAGCTGACCGTATATGCACGGATTTATTTC
Consensus: TTGTGTATTCTTGGCACACTTGTTGAAGATTAGCTGACCGTATATGCACGGATTTATTTC

120
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TAgACTATTTTATTCCATCGGTCTATGTTTCTATATTTGTGCCAGTACCATACTCTTTTA
Consensus: TAGACTATTTTATTCCATCGGTCTATGTTTCTATATTTGTGCCAGTACCATACTCTTTTA

180
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ ATTACTGTGTGTTGTAATATACTTTAAAATCAGGAACTGTGATGCCTCCAGCTTTGTTCT
Consensus: ATTACTGTGTGTTGTAATATACTTTAAAATCAGGAACTGTGATGCCTCCAGCTTTGTTCT

240
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TTGTCAAGATTGTTTTGGCCATTTGCAGTCCTTTGTCATTCTATATGACTTTtGGGATTG
Consensus: TTGTCAAGATTGTTTTGGCCATTTGCAGTCCTTTGTCATTCTATATGACTTTTGGGATTG

300
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TTTTTTCTATTTCTTTAAAAAAATGACACTGGGATTTTGATAGGGCTTGCATTGAATCTG
Consensus: TTTTTTCTATTTCTTTAAAAAAATGACACTGGGATTTTGATAGGGCTTGCATTGAATCTG

360
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TAGATCTCTTTGGGTGGTATGTCCATTTAGCTTCTATTATAGAGTTGTCTTTATCTTGCT
Consensus: TAGATCTCTTTGGGTGGTATGTCCATTTAGCTTCTATTATAGAGTTGTCTTTATCTTGCT

420
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ GATTTGACAGAGCTCTACACAGAGTATGTGCTAATATAACCTCAGTTTGTTCTTTGCTTA
Consensus: GATTTGACAGAGCTCTACACAGAGTATGTGCTAATATAACCTCAGTTTGTTCTTTGCTTA

480
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TAAATACTGTTTCTAATGATTTTTATTCTTTTTATTTTTTTTGAGACGGAGTCTTGCCCT
Consensus: TAAATACTGTTTCTAATGATTTTTATTCTTTTTATTTTTTTTGAGACGGAGTCTTGCCCT

540
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ GTCTACCAAGGCTGGATTGCGGTGGTTCAATCTCAGCTCCATGCCAACTCTGCCTCCTGG
Consensus: GTCTACCAAGGCTGGATTGCGGTGGTTCAATCTCAGCTCCATGCCAACTCTGCCTCCTGG

600
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ GGTCAACNAATTTCTTTGGCCTAGCCCCATGAATGCTGGGACCACAAGTTGTGCCACCAC
Consensus: GGTCAACNAATTTCTTTGGCCTAGCCCCATGAATGCTGGGACCACAAGTTGTGCCACCAC

660
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ GTGCAGCTAATTTTTTTGTTTTTTGGGAGAGATGGGGTTCATTCCTGCCCAACCGGGTTT
Consensus: GTGCAGCTAATTTTTTTGTTTTTTGGGAGAGATGGGGTTCATTCCTGCCCAACCGGGTTT

720
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ GAACCCTGGCTCAACCATCCTCTTTTTTTGGCCCCCTAATTGTGGAATCCGGCGTACCAC
Consensus: GAACCCTGGCTCAACCATCCTCTTTTTTTGGCCCCCTAATTGTGGAATCCGGCGTACCAC

780
 |    .    |    .    |    .    |    .    |    .    |    .    
H138a28b01.t1+ TNC                                                         
Consensus: TNC