= MISM; Mismatch (discrepancy) between reads and consensus |
= ALUS; Repetitive ALU sequence |
= PRMB; Possible Repeat Marker Base set by MIRA |
= EDxD; Delete operation set by EdIt |
= EDxI; Insert operation set by EdIt |
= EDxC; Change operation set by EdIt |
Contig id: 1
Contig length: 790
Avg. contig coverage: 2.7038
Consensus contains: A: 234 C: 149 G: 130 T: 274 N: 3 *: 0
Num reads: 4
Avg. read length: 534
Reads contain 2133 bases, 3 Ns and 0 gaps.
0 |
| . | . | . | . | . | . |
U13a01g08.t1+ | GAACCTCCTAATGCTTCGTCTTTCTGTTCTGCACATGGTCTGGTCACCTATGAATAAGTA |
Consensus: | GAACCTCCTAATGCTTCGTCTTTCTGTTCTGCACATGGTCTGGTCACCTATGAATAAGTA |
60 |
| . | . | . | . | . | . |
U13a01g08.t1+ | TGAAAATGCTTCGGACTTGAAGCCCATCGCCAATCCCAGTGCCAGACGTGTGTTTGCTCT |
U13a05h03.t1- | CTCT |
Consensus: | TGAAAATGCTTCGGACTTGAAGCCCATCGCCAATCCCAGTGCCAGACGTGTGTTTGCTCT |
120 |
| . | . | . | . | . | . |
U13a01g08.t1+ | TCCCGTTCAACTTGCAAAAGATTACGTGTCTCAACAACTTTTCTCTTTTCCATCATTAAT |
U13a05h03.t1- | TCCCGTTCAACTTGCAAAAGATTACGTGTCTCAACAACTTTTCTCTTTTCCATCATTAAT |
U13a03f07.t1- | TcTCAACAACTTTTcTCTTTTCCATCATTAAT |
Consensus: | TCCCGTTCAACTTGCAAAAGATTACGTGTCTCAACAACTTTTCTCTTTTCCATCATTAAT |
180 |
| . | . | . | . | . | . |
U13a01g08.t1+ | TATGTTTTTCCTTCATTCATCATTTTAAGGCATATGCTTAATAAGATAGACTTTTTTATG |
U13a05h03.t1- | TATGTTTTTCCTTCATTcATCATttTAAGGCATATGCTTAATAAGATAGACTTTTTTATG |
U13a03f07.t1- | tATGTTTTTCcTTCATTCATCATTTTAAGGCAtAtGCTTAATAAGATAGACTTTTTTATG |
Consensus: | TATGTTTTTCCTTCATTCATCATTTTAAGGCATATGCTTAATAAGATAGACTTTTTTATG |
240 |
| . | . | . | . | . | . |
U13a01g08.t1+ | CTGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT |
U13a05h03.t1- | CTGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT |
U13a03f07.t1- | CtGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT |
Consensus: | CTGTAATAAATAAATTCATAAACAAATAAAATATAAATATTGACCTATAGGGTCACAAGT |
300 |
| . | . | . | . | . | . |
U13a01g08.t1+ | GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC |
U13a05h03.t1- | GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC |
U13a03f07.t1- | GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC |
Consensus: | GAGAAGCAAAAGTTATGAACTCATTGTATTTGGCTGTTATTATGTACACTGTGTATATAC |
360 |
| . | . | . | . | . | . |
U13a01g08.t1+ | CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC |
U13a05h03.t1- | CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC |
U13a03f07.t1- | CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC |
Consensus: | CCATTACTATATACCCCGGAAGTTCACAGTTCCTCATTCCTGTAGGCTGCATTCATTCTC |
420 |
| . | . | . | . | . | . |
U13a01g08.t1+ | AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC |
U13a05h03.t1- | AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC |
U13a03f07.t1- | AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC |
Consensus: | AGGAAGGGGAGCTGGACTTGTCTCCTGAATCTTTAAACAACAACACAATCTGAGATAATC |
480 |
| . | . | . | . | . | . |
U13a01g08.t1+ | ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA |
U13a05h03.t1- | ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA |
U13a03f07.t1- | ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA |
U13a08c07.t1+ | TATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA |
Consensus: | ATTGTATTAACTCTATTGCTCATGGTATGTCTGCCACTTGCTGGGTACTTGAGTGGTTCA |
540 |
| . | . | . | . | . | . |
U13a01g08.t1+ | ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA |
U13a05h03.t1- | ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA |
U13a03f07.t1- | ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA |
U13a08c07.t1+ | ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA |
Consensus: | ACTTCAAATTTTGTGGCTACAAAGACACAGGAGATCCATTTCTCAAAATATTCCATTTTA |
600 |
| . | . | . | . | . | . |
U13a01g08.t1+ | ATTCTGATCCTATCTGAgCAATATAATAAAGTTTTAAAATAAACtTTCTTAGAAAATTAT |
U13a05h03.t1- | ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT |
U13a03f07.t1- | ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT |
U13a08c07.t1+ | ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT |
Consensus: | ATTCTGATCCTATCTGAGCAATATAATAAAGTTTTAAAATAAACTTTCTTAGAAAATTAT |
660 |
| . | . | . | . | . | . |
U13a01g08.t1+ | TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCAATTGGC |
U13a05h03.t1- | TTTTTTAATGTAAGC |
U13a03f07.t1- | TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCAATTGGCTGCTTTCCATGATGTGA |
U13a08c07.t1+ | TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCaATTGGCTGCTTTCCATGAT |
Consensus: | TTTTTTAATGTAAGCCAAATTAAAATTTCATCCTGCAATTGGCTGCTTTCCATGATGTGA |
720 |
| . | . | . | . | . | . |
U13a03f07.t1- | GGTCAATGAGTTTAGTTAAGAACTGTGATGGATNTGAGATCTTCCCCATANTTAGAAGNT |
Consensus: | GGTCAATGAGTTTAGTTAAGAACTGTGATGGATNTGAGATCTTCCCCATANTTAGAAGNT |
780 |
| . | . | . | . | . | . |
U13a03f07.t1- | AATGGGGGTC |
Consensus: | AATGGGGGTC |
Contig id: 2
Contig length: 370
Avg. contig coverage: 1
Consensus contains: A: 103 C: 94 G: 86 T: 81 N: 6 *: 0
Num reads: 1
Avg. read length: 370
Reads contain 364 bases, 6 Ns and 0 gaps.
0 |
| . | . | . | . | . | . |
U13a03f09.t1+ | TCCNCCAACCTTCTCTAACTCAAAACNAATGGAAGATGCGTTTGATGTTCAGCGCGATCA |
Consensus: | TCCNCCAACCTTCTCTAACTCAAAACNAATGGAAGATGCGTTTGATGTTCAGCGCGATCA |
60 |
| . | . | . | . | . | . |
U13a03f09.t1+ | TCTGGCGCTGATGAAAGATTTGAAACGTCTGCTGCGTGCAGGTGGGACNATCATGTTCTC |
Consensus: | TCTGGCGCTGATGAAAGATTTGAAACGTCTGCTGCGTGCAGGTGGGACNATCATGTTCTC |
120 |
| . | . | . | . | . | . |
U13a03f09.t1+ | GAACAACAAACGTGGCTTCCGTATGGATCTCGACGGCCTGGCAAAACTGGGACTGAAAGC |
Consensus: | GAACAACAAACGTGGCTTCCGTATGGATCTCGACGGCCTGGCAAAACTGGGACTGAAAGC |
180 |
| . | . | . | . | . | . |
U13a03f09.t1+ | ACAAGAAATTACNCNAAAAACGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAA |
Consensus: | ACAAGAAATTACNCNAAAAACGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAA |
240 |
| . | . | . | . | . | . |
U13a03f09.t1+ | CTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGTATGCATGGC |
Consensus: | CTGCTGGCTGATTACCGCAGCCTGAAAGGAATAGTAATGTCATTAATCAGTATGCATGGC |
300 |
| . | . | . | . | . | . |
U13a03f09.t1+ | GCATGGCTGTCGTTCAGCGACNCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAT |
Consensus: | GCATGGCTGTCGTTCAGCGACNCGCCGCTTCTCGATAACGCAGAACTGCATATCGAAGAT |
360 |
| . | . | . | . | . | . |
U13a03f09.t1+ | AACGAACGTG |
Consensus: | AACGAACGTG |
Contig id: 3
Contig length: 783
Avg. contig coverage: 1
Consensus contains: A: 163 C: 161 G: 151 T: 306 N: 2 *: 0
Num reads: 1
Avg. read length: 783
Reads contain 781 bases, 2 Ns and 0 gaps.
0 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TGTTGCTTGTGGATGTCCAGTTTTCCCAGTACCATCTACAAAAAGACTATCCTTTCCCTA |
Consensus: | TGTTGCTTGTGGATGTCCAGTTTTCCCAGTACCATCTACAAAAAGACTATCCTTTCCCTA |
60 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TTGTGTATTCTTGGCACACTTGTTGAAGATTAGCTGACCGTATATGCACGGATTTATTTC |
Consensus: | TTGTGTATTCTTGGCACACTTGTTGAAGATTAGCTGACCGTATATGCACGGATTTATTTC |
120 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TAgACTATTTTATTCCATCGGTCTATGTTTCTATATTTGTGCCAGTACCATACTCTTTTA |
Consensus: | TAGACTATTTTATTCCATCGGTCTATGTTTCTATATTTGTGCCAGTACCATACTCTTTTA |
180 |
| . | . | . | . | . | . |
H138a28b01.t1+ | ATTACTGTGTGTTGTAATATACTTTAAAATCAGGAACTGTGATGCCTCCAGCTTTGTTCT |
Consensus: | ATTACTGTGTGTTGTAATATACTTTAAAATCAGGAACTGTGATGCCTCCAGCTTTGTTCT |
240 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TTGTCAAGATTGTTTTGGCCATTTGCAGTCCTTTGTCATTCTATATGACTTTtGGGATTG |
Consensus: | TTGTCAAGATTGTTTTGGCCATTTGCAGTCCTTTGTCATTCTATATGACTTTTGGGATTG |
300 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TTTTTTCTATTTCTTTAAAAAAATGACACTGGGATTTTGATAGGGCTTGCATTGAATCTG |
Consensus: | TTTTTTCTATTTCTTTAAAAAAATGACACTGGGATTTTGATAGGGCTTGCATTGAATCTG |
360 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TAGATCTCTTTGGGTGGTATGTCCATTTAGCTTCTATTATAGAGTTGTCTTTATCTTGCT |
Consensus: | TAGATCTCTTTGGGTGGTATGTCCATTTAGCTTCTATTATAGAGTTGTCTTTATCTTGCT |
420 |
| . | . | . | . | . | . |
H138a28b01.t1+ | GATTTGACAGAGCTCTACACAGAGTATGTGCTAATATAACCTCAGTTTGTTCTTTGCTTA |
Consensus: | GATTTGACAGAGCTCTACACAGAGTATGTGCTAATATAACCTCAGTTTGTTCTTTGCTTA |
480 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TAAATACTGTTTCTAATGATTTTTATTCTTTTTATTTTTTTTGAGACGGAGTCTTGCCCT |
Consensus: | TAAATACTGTTTCTAATGATTTTTATTCTTTTTATTTTTTTTGAGACGGAGTCTTGCCCT |
540 |
| . | . | . | . | . | . |
H138a28b01.t1+ | GTCTACCAAGGCTGGATTGCGGTGGTTCAATCTCAGCTCCATGCCAACTCTGCCTCCTGG |
Consensus: | GTCTACCAAGGCTGGATTGCGGTGGTTCAATCTCAGCTCCATGCCAACTCTGCCTCCTGG |
600 |
| . | . | . | . | . | . |
H138a28b01.t1+ | GGTCAACNAATTTCTTTGGCCTAGCCCCATGAATGCTGGGACCACAAGTTGTGCCACCAC |
Consensus: | GGTCAACNAATTTCTTTGGCCTAGCCCCATGAATGCTGGGACCACAAGTTGTGCCACCAC |
660 |
| . | . | . | . | . | . |
H138a28b01.t1+ | GTGCAGCTAATTTTTTTGTTTTTTGGGAGAGATGGGGTTCATTCCTGCCCAACCGGGTTT |
Consensus: | GTGCAGCTAATTTTTTTGTTTTTTGGGAGAGATGGGGTTCATTCCTGCCCAACCGGGTTT |
720 |
| . | . | . | . | . | . |
H138a28b01.t1+ | GAACCCTGGCTCAACCATCCTCTTTTTTTGGCCCCCTAATTGTGGAATCCGGCGTACCAC |
Consensus: | GAACCCTGGCTCAACCATCCTCTTTTTTTGGCCCCCTAATTGTGGAATCCGGCGTACCAC |
780 |
| . | . | . | . | . | . |
H138a28b01.t1+ | TNC |
Consensus: | TNC |